PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G329400.3
Common NameB456_009G329400, LOC105765801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 301aa    MW: 33803.5 Da    PI: 8.8645
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G329400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-322073255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWtp+LH++F++av++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Gorai.009G329400.3 20 PRLRWTPQLHHCFLHAVDRLGGQHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73
                        8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3471676IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-311676IPR009057Homeodomain-like
SuperFamilySSF466892.69E-151875IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-232073IPR006447Myb domain, plants
PfamPF002493.4E-82172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRCGRHNGA VRQYIRSKVP RLRWTPQLHH CFLHAVDRLG GQHKATPKLV LQLMDVKGLT  60
ISHVKSHLQM YRSMRSDYGR QVKSSTYERR QSFDDNHDFD GRVVPIEESC SHLIYNNPFP  120
SKRHGICETR VSNTCSFDDY KQTMDARKRI KQDNGGYVWD QTINDSHSLG QPLALSLPHD  180
LYSLNAFRSY SLATKVEVED QKRAHAQDAK LVERNIRRQE EEDGGGGGCE LSLSLSLQYH  240
NTSSTSETSS SEAFSSYLRS NYKDCWGSSS TSTSSSSSSS SSVTRRSAIN LDLSIALCGN  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19720.0flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440504.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A0D2TYV90.0A0A0D2TYV9_G
STRINGVIT_01s0137g00050.t012e-85(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-36G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]